PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000868.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 218aa    MW: 25075 Da    PI: 9.3538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000868.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.71.3e-2868354128
                      NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                              ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s++ge+   +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Itr_sc000868.1_g00001.1   6 GDKEWYFFCIRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSTGGEThhcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 83 
                              789**************************************95554556***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.0621109IPR003441NAC domain
SuperFamilySSF1019417.72E-334108IPR003441NAC domain
PfamPF023651.7E-12983IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
IGTHVGDKEW YFFCIRGRKY RNSVRPNRVT GSGFWKATGI DKPVYSTGGE THHCIGLKKS  60
LVYYRGSAGK GTKTDWMMHE FRLPPKLSDK NNNICQEAEV WTLCRIFKRT TNYKRCMPDW  120
RQQTSRQSTI VENNASSKNE AIMGAAQQEQ RNQFYASNDQ ISMALSSYSS SSNTTTFWNS  180
PKLLDNNHFF IGENPHWDEL KSVVDLATDP QSFCYSHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-30611569171NO APICAL MERISTEM PROTEIN
1ut4_B2e-30611569171NO APICAL MERISTEM PROTEIN
1ut7_A2e-30611569171NO APICAL MERISTEM PROTEIN
1ut7_B2e-30611569171NO APICAL MERISTEM PROTEIN
3swm_A2e-30611572174NAC domain-containing protein 19
3swm_B2e-30611572174NAC domain-containing protein 19
3swm_C2e-30611572174NAC domain-containing protein 19
3swm_D2e-30611572174NAC domain-containing protein 19
3swp_A2e-30611572174NAC domain-containing protein 19
3swp_B2e-30611572174NAC domain-containing protein 19
3swp_C2e-30611572174NAC domain-containing protein 19
3swp_D2e-30611572174NAC domain-containing protein 19
4dul_A2e-30611569171NAC domain-containing protein 19
4dul_B2e-30611569171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580368.12e-72PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-61NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A067E9J32e-71A0A067E9J3_CITSI; Uncharacterized protein
TrEMBLA0A067E9W22e-71A0A067E9W2_CITSI; Uncharacterized protein
TrEMBLV4TFI72e-71V4TFI7_9R
TrEMBLV4TKN82e-71V4TKN8_9R
STRINGSolyc07g045030.2.12e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-61NAC domain containing protein 42